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    spastin, putative (Protein of unknown function, DUF599) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834647, updated on 18-Sep-2024

    Summary

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    Official Full Name
    spastin, putative (Protein of unknown function, DUF599)
    Primary source
    TAIR:AT5G46060
    Locus tag
    AT5G46060
    See related
    Araport:AT5G46060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCL19.11; MCL19_11
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (18681326..18682708)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transcription elongation factor-like protein Neighboring gene Major facilitator superfamily protein Neighboring gene peptide transporter 3 Neighboring gene Guanylate-binding family protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123974.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    spastin, putative (Protein of unknown function, DUF599)
    NP_199418.1
    • Protein of unknown function, DUF599; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT5G24600.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18681326..18682708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123974.3 → NP_199418.1  spastin, putative (Protein of unknown function, DUF599) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199418.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFX2, A0A5S9YBF0, A0A654G8Z5, Q9FNL6
      Conserved Domains (1) summary
      pfam04654
      Location:13 → 218
      DUF599; Protein of unknown function, DUF599
    Nucleotide Protein
    Heading Accession and Version

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