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    neuronal PAS domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836540, updated on 18-Sep-2024

    Summary

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    Official Full Name
    neuronal PAS domain protein
    Primary source
    TAIR:AT5G64190
    Locus tag
    AT5G64190
    See related
    Araport:AT5G64190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSJ1.3; MSJ1_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (25679425..25681265)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene plant/protein Neighboring gene dentin sialophosphoprotein-like protein Neighboring gene tropomyosin Neighboring gene serine/arginine-rich splicing factor-like protein, putative Neighboring gene alternative oxidase 2 Neighboring gene Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Marker and readout genes for defense priming in Pseudomonas cannabina pv. alisalensis interaction aid understanding systemic immunity in Arabidopsis. Sistenich AJ, et al. Sci Rep, 2024 Feb 12. PMID 38347062, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_125815.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within priming of cellular response to stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    neuronal PAS domain protein
    NP_201224.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25679425..25681265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345621.1 → NP_001330817.1  neuronal PAS domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBZ0, A0A5S9YJ13, A0A654GE76

    2. NM_125815.2 → NP_201224.1  neuronal PAS domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201224.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YJ13, Q9FMG5
    Nucleotide Protein
    Heading Accession and Version

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