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    C18orf8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820375, updated on 18-Sep-2024

    Summary

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    Official Full Name
    C18orf8
    Primary source
    TAIR:AT3G12010
    Locus tag
    AT3G12010
    See related
    Araport:AT3G12010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    16
    Sequence:
    Chromosome: 3; NC_003074.8 (3820352..3825765)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ECA1 gametogenesis family protein (DUF784) Neighboring gene S-locus related protein SLR1, putative (S1) Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane) Neighboring gene DNA-3-methyladenine glycosylase (MAG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Miscellaneous features

    • Loc: 3820787-3820852 AT3G12010.uORF1-1
    • Loc: 3821061-3821162 AT3G12010.uORF1-2
    • Loc: 3821259-3821276 AT3G12010.uORF1-3
    NM_112035.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Mon1-Ccz1 complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    C18orf8
    NP_187808.3
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3820352..3825765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112035.4 → NP_187808.3  C18orf8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187808.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XB87, F4J8L1
      Conserved Domains (2) summary
      sd00039
      Location:35 → 66
      7WD40; WD40 repeat [structural motif]
      pfam07035
      Location:517 → 662
      Mic1; Colon cancer-associated protein Mic1-like
    Nucleotide Protein
    Heading Accession and Version

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