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    JAZ11 jasmonate-zim-domain protein 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823426, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JAZ11
    Official Full Name
    jasmonate-zim-domain protein 11
    Primary source
    TAIR:AT3G43440
    Locus tag
    AT3G43440
    See related
    Araport:AT3G43440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    jasmonate-zim-domain protein 11; TIFY3A
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    Genomic context

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    See JAZ11 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (15367546..15370157)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Jasmonate-ZIM domain proteins interact with the R2R3-MYB transcription factors MYB21 and MYB24 to affect Jasmonate-regulated stamen development in Arabidopsis. Song S, et al. Plant Cell, 2011 Mar. PMID 21447791, Free PMC Article
    2. Jasmonate regulates the inducer of cbf expression-C-repeat binding factor/DRE binding factor1 cascade and freezing tolerance in Arabidopsis. Hu Y, et al. Plant Cell, 2013 Aug. PMID 23933884, Free PMC Article
    3. A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis. Chung HS, et al. Plant Cell, 2009 Jan. PMID 19151223, Free PMC Article
    4. The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins. Chini A, et al. Plant J, 2009 Jul. PMID 19309455
    5. The Arabidopsis F-box protein SKP1-INTERACTING PARTNER 31 modulates seed maturation and seed vigor by targeting JASMONATE ZIM DOMAIN proteins independently of jasmonic acid-isoleucine. Varshney V, et al. Plant Cell, 2023 Sep 27. PMID 37462265, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203078.1
    NM_114212.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    jasmonate-zim-domain protein 11
    NP_001190007.1
    • jasmonate-zim-domain protein 11 (JAZ11); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 12 (TAIR:AT5G20900.1).
    NP_189930.1
    • jasmonate-zim-domain protein 11 (JAZ11); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 12 (TAIR:AT5G20900.1); Has 581 Blast hits to 344 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 581; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      15367546..15370157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114212.5 → NP_189930.1  jasmonate-zim-domain protein 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189930.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M246
      UniProtKB/TrEMBL
      A0A5S9XHG2
      Conserved Domains (2) summary
      smart00979
      Location:125 → 160
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      pfam09425
      Location:197 → 221
      CCT_2; Divergent CCT motif

    2. NM_001203078.1 → NP_001190007.1  jasmonate-zim-domain protein 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190007.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IZ48
      Conserved Domains (2) summary
      smart00979
      Location:39 → 74
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      pfam09425
      Location:111 → 135
      CCT_2; Divergent CCT motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M246.1

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