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    ELC-Like ELCH-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831232, updated on 18-Sep-2024

    Summary

    Official Symbol
    ELC-Like
    Official Full Name
    ELCH-like protein
    Primary source
    TAIR:AT5G13860
    Locus tag
    AT5G13860
    See related
    Araport:AT5G13860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ELCH-like; MAC12.18; MAC12_18
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    Genomic context

    See ELC-Like in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (4472986..4474530, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FIZZY-related 3 Neighboring gene tRNA-Lys Neighboring gene ncRNA Neighboring gene nascent polypeptide-associated complex subunit alpha-like protein 3 Neighboring gene xyloglucan endotransglucosylase/hydrolase 5 Neighboring gene cotton fiber protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_121389.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of ESCRT I complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    ELCH-like protein
    NP_196890.1
    • ELCH-like (ELC-Like); FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, protein modification process, protein transport, post-translational protein modification; LOCATED IN: ESCRT I complex; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme/RWD-like protein (TAIR:AT3G12400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4472986..4474530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121389.3NP_196890.1  ELCH-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196890.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFY6
      UniProtKB/TrEMBL
      A0A178UAW5, A0A5S9Y4G9
      Conserved Domains (2) summary
      pfam05743
      Location:37156
      UEV; UEV domain
      pfam09454
      Location:288345
      Vps23_core; Vps23 core domain