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    NDB3 NAD(P)H dehydrogenase B3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828234, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NDB3
    Official Full Name
    NAD(P)H dehydrogenase B3
    Primary source
    TAIR:AT4G21490
    Locus tag
    AT4G21490
    See related
    Araport:AT4G21490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18E5.110; F18E5_110; NAD(P)H dehydrogenase B3
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    Genomic context

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    See NDB3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (11436326..11439506, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S24/S35 Neighboring gene riboflavin kinase/FMN hydrolase Neighboring gene sugar transporter protein 12 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis genes encoding mitochondrial type II NAD(P)H dehydrogenases have different evolutionary origin and show distinct responses to light. Michalecka AM, et al. Plant Physiol, 2003 Oct. PMID 12972666, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_118269.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables NADH dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables NADH dehydrogenase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in NADH oxidation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrial intermembrane space ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NAD(P)H dehydrogenase B3
    NP_193880.5
    • NAD(P)H dehydrogenase B3 (NDB3); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-HAND 2 (InterPro:IPR018249), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B2 (TAIR:AT4G05020.1); Has 16626 Blast hits to 16156 proteins in 2577 species: Archae - 456; Bacteria - 13275; Metazoa - 114; Fungi - 758; Plants - 505; Viruses - 0; Other Eukaryotes - 1518 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11436326..11439506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341491.1 → NP_001329575.1  NAD(P)H dehydrogenase B3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V839, A0A1P8B848, A0A5S9XUV9

    2. NM_118269.6 → NP_193880.5  NAD(P)H dehydrogenase B3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193880.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JJJ3, O65414
      UniProtKB/TrEMBL
      A0A178V839, A0A5S9XUV9
      Conserved Domains (3) summary
      PTZ00318
      Location:54 → 580
      PTZ00318; NADH dehydrogenase-like protein; Provisional
      cl08302
      Location:373 → 407
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21454
      Location:234 → 313
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JJJ3.1

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