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    Peptidase S41 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827495, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptidase S41 family protein
    Primary source
    TAIR:AT4G17740
    Locus tag
    AT4G17740
    See related
    Araport:AT4G17740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4905C; FCAALL.169
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    13
    Sequence:
    Chromosome: 4; NC_003075.7 (9866977..9869752, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene syntaxin of plants 23 Neighboring gene heat shock factor 1 Neighboring gene PCNA domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diverged Early From CtpB and CtpC, CtpA Has Evolved to Process D1 Precursor in Oxygenic Photosynthetic Organisms. Chang W, et al. Front Plant Sci, 2021. PMID 34002114, Free PMC Article
    2. C-terminal processing of reaction center protein D1 is essential for the function and assembly of photosystem II in Arabidopsis. Che Y, et al. Proc Natl Acad Sci U S A, 2013 Oct 1. PMID 24043802, Free PMC Article
    3. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
    4. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
    5. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. C-terminal processing of reaction center protein D1 is essential for the function and assembly of photosystem II in Arabidopsis. [C-terminal processing enzyme] [CtpA]
      Title: C-terminal processing of reaction center protein D1 is essential for the function and assembly of photosystem II in Arabidopsis.
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    General gene information

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    Homology

    NM_117883.2
    NM_179070.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast thylakoid lumen HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in thylakoid lumen HDA PubMed 

    General protein information

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    Preferred Names
    Peptidase S41 family protein
    NP_193509.1
    • Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9204 Blast hits to 9194 proteins in 1993 species: Archae - 0; Bacteria - 5702; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
    NP_849401.1
    • Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9160 Blast hits to 9150 proteins in 1973 species: Archae - 0; Bacteria - 5658; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9866977..9869752 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179070.1 → NP_849401.1  Peptidase S41 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849401.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1H3
      Conserved Domains (3) summary
      cd07560
      Location:309 → 474
      Peptidase_S41_CPP; C-terminal processing peptidase; serine protease family S41
      PLN00049
      Location:116 → 504
      PLN00049; carboxyl-terminal processing protease; Provisional
      cd00988
      Location:199 → 288
      PDZ_CTP_protease; PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for ...

    2. NM_117883.2 → NP_193509.1  Peptidase S41 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193509.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JPY6, O23614, Q9ZP02
      UniProtKB/TrEMBL
      A0A178V1H3, A0A5S9XTG7, A0A654FQS1
      Conserved Domains (1) summary
      PLN00049
      Location:126 → 514
      PLN00049; carboxyl-terminal processing protease; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23614.1

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