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    LOC100216736 uncharacterized LOC100216736 [ Zea mays ]

    Gene ID: 100216736, updated on 27-Nov-2024

    Summary

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    Gene symbol
    LOC100216736
    Gene description
    uncharacterized LOC100216736
    Locus tag
    ZEAMMB73_Zm00001d018214
    See related
    EnsemblRapid:Zm00001eb256330
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    pco106344; GRMZM2G046459
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    Genomic context

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    See LOC100216736 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 5 NC_050100.1 (219288621..219291858, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 5 NC_024463.2 (216732294..216735531, complement)

    Chromosome 5 - NC_050100.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase 1Acc oxidase Neighboring gene salivary acidic proline-rich phosphoprotein 1/2-like Neighboring gene uncharacterized LOC103627801 Neighboring gene transfer RNA lysine (anticodon CUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Glucan endo-1,3-beta-glucosidase 12; uncharacterized protein LOC100216736
    Names
    O-Glycosyl hydrolase family 17 protein
    pco106344(452)
    putative O-glycosyl hydrolase family 17 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001143141.2 → NP_001136613.2  Glucan endo-1,3-beta-glucosidase 12 precursor

      See identical proteins and their annotated locations for NP_001136613.2

      Status: VALIDATED

      Source sequence(s)
      BT041736
      UniProtKB/TrEMBL
      B4FA75, B4FJH8
      Related
      Zm00001eb256330_P001, Zm00001eb256330_T001
      Conserved Domains (2) summary
      smart00768
      Location:393 → 475
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:29 → 351
      Glyco_hydro_1; Glycosyl hydrolase family 1

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050100.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      219288621..219291858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020553106.1 → XP_020408695.1  uncharacterized protein LOC100216736 isoform X1

      UniProtKB/TrEMBL
      A0A3L6EGW4, C4J480
      Conserved Domains (2) summary
      smart00768
      Location:393 → 471
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:29 → 351
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials