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    PRA1.F4 prenylated RAB acceptor 1.F4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820580, updated on 18-Sep-2024

    Summary

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    Gene symbol
    PRA1.F4
    Gene description
    prenylated RAB acceptor 1.F4
    Locus tag
    AT3G13710
    See related
    Araport:AT3G13710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    prenylated RAB acceptor 1.F4
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    Genomic context

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    See PRA1.F4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (4490628..4493831, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene LSD1-like2 Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene PRA1 (Prenylated rab acceptor) family protein Neighboring gene ncRNA Neighboring gene cytochrome P450, family 90, subfamily D, polypeptide 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Prenylated Rab GTPase Receptor PRA1.F4 Contributes to Protein Exit from the Golgi Apparatus. Lee MH, et al. Plant Physiol, 2017 Jul. PMID 28487479, Free PMC Article
    2. The PRA1 gene family in Arabidopsis. Alvim Kamei CL, et al. Plant Physiol, 2008 Aug. PMID 18583532, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. an appropriate level of AtPRA1.F4 is crucial for its function at the Golgi apparatus.
      Title: The Prenylated Rab GTPase Receptor PRA1.F4 Contributes to Protein Exit from the Golgi Apparatus.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112221.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within vesicle-mediated transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    prenylated RAB acceptor 1.F4
    NP_187984.1
    • prenylated RAB acceptor 1.F4 (PRA1.F4); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT3G13720.1); Has 446 Blast hits to 446 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 44; Plants - 296; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4490628..4493831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112221.2 → NP_187984.1  prenylated RAB acceptor 1.F4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187984.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LIC7
      UniProtKB/TrEMBL
      A0A178VD99, A0A5S9XBV6
      Conserved Domains (1) summary
      pfam03208
      Location:31 → 171
      PRA1; PRA1 family protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LIC7.1

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