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    ALPHA-SNAP1 alpha-soluble NSF attachment protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824812, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ALPHA-SNAP1
    Official Full Name
    alpha-soluble NSF attachment protein 1
    Primary source
    TAIR:AT3G56450
    Locus tag
    AT3G56450
    See related
    Araport:AT3G56450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    alpha-soluble NSF attachment protein 1
    Summary
    member of alpha-SNAP Gene Family
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    Genomic context

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    See ALPHA-SNAP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (20930557..20932869)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene import inner membrane translocase subunit Neighboring gene autophagy 18 D-like protein Neighboring gene ncRNA Neighboring gene GroES-like zinc-binding alcohol dehydrogenase family protein Neighboring gene ncRNA Neighboring gene F-box family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The canonical α-SNAP is essential for gametophytic development in Arabidopsis. Liu F, et al. PLoS Genet, 2021 Apr. PMID 33886546, Free PMC Article
    2. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The canonical alpha-SNAP is essential for gametophytic development in Arabidopsis.
      Title: The canonical α-SNAP is essential for gametophytic development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115503.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    alpha-soluble NSF attachment protein 1
    NP_191204.1
    • alpha-soluble NSF attachment protein 1 (ALPHA-SNAP1); FUNCTIONS IN: soluble NSF attachment protein activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: alpha-soluble NSF attachment protein 2 (TAIR:AT3G56190.1); Has 606 Blast hits to 606 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 145; Plants - 93; Viruses - 11; Other Eukaryotes - 97 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20930557..20932869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115503.1 → NP_191204.1  alpha-soluble NSF attachment protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191204.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LXZ5
      UniProtKB/TrEMBL
      A0A5S9XM45
      Conserved Domains (2) summary
      cd15832
      Location:99 → 314
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
      pfam14938
      Location:99 → 314
      SNAP; Soluble NSF attachment protein, SNAP
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXZ5.1

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