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    Smim10l2a small integral membrane protein 10 like 2A [ Mus musculus (house mouse) ]

    Gene ID: 320237, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Smim10l2aprovided by MGI
    Official Full Name
    small integral membrane protein 10 like 2Aprovided by MGI
    Primary source
    MGI:MGI:2443645
    See related
    Ensembl:ENSMUSG00000054850 AllianceGenome:MGI:2443645
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ncrna00086; 6330419J24Rik
    Summary
    Orthologous to several human genes including SMIM10L2A (small integral membrane protein 10 like 2A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in ovary adult (RPKM 21.2), CNS E18 (RPKM 9.7) and 11 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Smim10l2a in Genome Data Viewer
    Location:
    X A5; X 30.06 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (55419877..55423830)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (56374517..56378470)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 38625 Neighboring gene zinc finger protein 449 Neighboring gene predicted gene 2155 Neighboring gene STARR-positive B cell enhancer ABC_E8761 Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene integrator complex subunit 6 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Non-coding RNA Neat1 and Abhd11os expressions are dysregulated in medium spiny neurons of Huntington disease model mice. Park H, et al. Neurosci Res, 2019 Oct. PMID 30391555
    2. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    non-protein coding RNA 86

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183030.2 → NP_898851.1  non-protein coding RNA 86

      Status: VALIDATED

      Source sequence(s)
      AL683799
      Consensus CDS
      CCDS90717.1
      UniProtKB/TrEMBL
      A0A0B4J1F8
      Related
      ENSMUSP00000066705.4, ENSMUST00000068106.5
      Conserved Domains (1) summary
      pfam15118
      Location:21 → 77
      DUF4560; Domain of unknown function (DUF4560)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      55419877..55423830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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