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    B0393.5 Nidogen [ Caenorhabditis elegans ]

    Gene ID: 175632, updated on 9-Dec-2024

    Summary

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    Official Symbol
    B0393.5
    Official Full Name
    Nidogen
    Primary source
    WormBase:WBGene00007170
    Locus tag
    CELE_B0393.5
    See related
    AllianceGenome:WB:WBGene00007170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be an extracellular matrix structural constituent. Predicted to be involved in cell-matrix adhesion. Predicted to be located in collagen-containing extracellular matrix and membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See B0393.5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    16
    Sequence:
    Chromosome: III; NC_003281.10 (4765774..4776342)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene F-box domain-containing protein Neighboring gene ncRNA Neighboring gene Maelstrom domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene EGF-like domain-containing protein Neighboring gene CUB domain-containing protein;Insulin/EGF-Receptor L Domain protein Neighboring gene RING-type domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The in-silico characterization of the Caenorhabditis elegans matrisome and proposal of a novel collagen classification. Teuscher AC, et al. Matrix Biol Plus, 2019 Feb. PMID 33543001, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables extracellular matrix structural constituent RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Nidogen
    NP_497982.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      4765774..4776342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065581.5 → NP_497982.2  Nidogen [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497982.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17494
      Conserved Domains (4) summary
      smart00179
      Location:565 → 606
      EGF_CA; Calcium-binding EGF-like domain
      smart00539
      Location:120 → 255
      NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
      pfam07645
      Location:520 → 563
      EGF_CA; Calcium-binding EGF domain
      pfam12947
      Location:611 → 644
      EGF_3; EGF domain
    Nucleotide Protein
    Heading Accession and Version

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