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    ttr-26 Transthyretin-like family protein [ Caenorhabditis elegans ]

    Gene ID: 180211, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ttr-26
    Official Full Name
    Transthyretin-like family protein
    Primary source
    WormBase:WBGene00013079
    Locus tag
    CELE_Y51A2D.11
    See related
    AllianceGenome:WB:WBGene00013079
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in cell surface and extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ttr-26 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (18558758..18560288, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DUF4150 domain-containing protein;TransThyretin-Related family domain Neighboring gene TransThyretin-Related family domain Neighboring gene Serpentine receptor class gamma Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A gene-centered C. elegans protein-DNA interaction network. Deplancke B, et al. Cell, 2006 Jun 16. PMID 16777607
    2. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
    3. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    4. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    5. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transthyretin-like family protein
    NP_507630.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      18558758..18560288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075229.8 → NP_507630.1  Transthyretin-like family protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507630.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XXR5
      Conserved Domains (1) summary
      pfam01060
      Location:33 → 109
      TTR-52; Transthyretin-like family
    Nucleotide Protein
    Heading Accession and Version

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