U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rpn-6.2 putative 26S proteasome regulatory subunit rpn-6.2 [ Caenorhabditis elegans ]

    Gene ID: 176273, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rpn-6.2
    Official Full Name
    putative 26S proteasome regulatory subunit rpn-6.2
    Primary source
    WormBase:WBGene00010309
    Locus tag
    CELE_F59B2.5
    See related
    AllianceGenome:WB:WBGene00010309
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable structural molecule activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle, lid subcomplex. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rpn-6.2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    6
    Sequence:
    Chromosome: III; NC_003281.10 (8999817..9001999, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene putative sugar kinase R08D7.7 Neighboring gene putative amino acid transporter skat-1 Neighboring gene N-acetylglucosamine-6-phosphate deacetylase Neighboring gene Secreted protein Neighboring gene Zinc finger-interacting factor 1 Neighboring gene Ras-related protein rab-6.1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural molecule activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of proteasome regulatory particle, lid subcomplex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative 26S proteasome regulatory subunit rpn-6.2
    NP_001254972.1
    • Confirmed by transcript evidence
    NP_001254973.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      8999817..9001999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268043.2 → NP_001254972.1  putative 26S proteasome regulatory subunit rpn-6.2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254972.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0P266, C0P267, P34481
      Conserved Domains (1) summary
      COG5159
      Location:14 → 411
      RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

    2. NM_001268044.3 → NP_001254973.1  putative 26S proteasome regulatory subunit rpn-6.2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254973.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P34481
      Conserved Domains (1) summary
      COG5159
      Location:1 → 208
      RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P34481.3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools