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    Y76B12C.3 Selenoprotein F;Selenoprotein F/M domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176999, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y76B12C.3
    Official Full Name
    Selenoprotein F;Selenoprotein F/M domain-containing protein
    Primary source
    WormBase:WBGene00022297
    Locus tag
    CELE_Y76B12C.3
    See related
    AllianceGenome:WB:WBGene00022297
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable oxidoreductase activity. Predicted to be active in endoplasmic reticulum lumen. Is expressed in intestine and pharyngeal gland cell. Orthologous to human SELENOF (selenoprotein F). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y76B12C.3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (1973705..1975682)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Mitochondrial protein M19;Ubiquinol-cytochrome-c reductase complex assembly factor 2 Neighboring gene Protein MNN4-like;Translation initiation factor IF-2 Neighboring gene Neuropeptide-Like Protein Neighboring gene TPR_REGION domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables oxidoreductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum lumen IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Selenoprotein F;Selenoprotein F/M domain-containing protein
    NP_001368309.1
    • Confirmed by transcript evidence
    NP_500152.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      1973705..1975682
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067751.5 → NP_500152.1  Selenoprotein F [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500152.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N4C6
      Conserved Domains (1) summary
      pfam08806
      Location:77 → 149
      Sep15_SelM; Sep15/SelM redox domain

    2. NM_001380076.1 → NP_001368309.1  Selenoprotein F/M domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PMQ9
      Conserved Domains (1) summary
      pfam08806
      Location:8 → 53
      Sep15_SelM; Sep15/SelM redox domain
    Nucleotide Protein
    Heading Accession and Version

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