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    VF13D12L.3 Malate dehydrogenase [ Caenorhabditis elegans ]

    Gene ID: 174795, updated on 9-Dec-2024

    Summary

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    Official Symbol
    VF13D12L.3
    Official Full Name
    Malate dehydrogenase
    Primary source
    WormBase:WBGene00012149
    Locus tag
    CELE_VF13D12L.3
    See related
    AllianceGenome:WB:WBGene00012149
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable oxidoreductase activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See VF13D12L.3 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    9
    Sequence:
    Chromosome: II; NC_003280.10 (11706009..11713602)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ERCC4 domain-containing protein Neighboring gene inositol-3-phosphate synthase Neighboring gene ncRNA Neighboring gene Cyclopropane-fatty-acyl-phospholipid synthase Neighboring gene MARVEL domain-containing protein Neighboring gene Prion-like-(Q/N-rich)-domain-bearing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SAFER, an Analysis Method of Quantitative Proteomic Data, Reveals New Interactors of the C. elegans Autophagic Protein LGG-1. Yi Z, et al. J Proteome Res, 2016 May 6. PMID 26999449
    2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    3. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    4. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Malate dehydrogenase
    NP_496500.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      11706009..11713602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064099.8 → NP_496500.1  Malate dehydrogenase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496500.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDW8
      Conserved Domains (2) summary
      PLN00105
      Location:54 → 375
      PLN00105; malate/L-lactate dehydrogenase; Provisional
      pfam02615
      Location:53 → 379
      Ldh_2; Malate/L-lactate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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