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    B0348.2 LITAF domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181936, updated on 9-Dec-2024

    Summary

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    Official Symbol
    B0348.2
    Official Full Name
    LITAF domain-containing protein
    Primary source
    WormBase:WBGene00015152
    Locus tag
    CELE_B0348.2
    See related
    AllianceGenome:WB:WBGene00015152
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See B0348.2 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (45310..46924)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase;1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta egl-8;Phosphoinositide phospholipase C Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene LITAF domain-containing protein Neighboring gene Serpentine Receptor, class T

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LITAF domain-containing protein
    NP_001300013.1
    • Confirmed by transcript evidence
    NP_503127.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      45310..46924
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070726.4 → NP_503127.2  LITAF domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_503127.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O61958
      Conserved Domains (1) summary
      smart00714
      Location:18 → 83
      LITAF; Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins

    2. NM_001313084.3 → NP_001300013.1  LITAF domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AV78
    Nucleotide Protein
    Heading Accession and Version

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