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    mstr-1 AN1-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172441, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mstr-1
    Official Full Name
    AN1-type domain-containing protein
    Primary source
    WormBase:WBGene00009050
    Locus tag
    CELE_F22D6.2
    See related
    AllianceGenome:WB:WBGene00009050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity and zinc ion binding activity. Located in nucleus. Is expressed in several structures, including intestine; midbody; muscle cell; nervous system; and seam cell. Orthologous to human ZFAND5 (zinc finger AN1-type containing 5) and ZFAND6 (zinc finger AN1-type containing 6). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See mstr-1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (7079868..7081520, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Peptidase M14 carboxypeptidase A domain-containing protein Neighboring gene ncRNA Neighboring gene Tyrosine-protein kinase Neighboring gene Asparagine--tRNA ligase, cytoplasmic Neighboring gene putative NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial Neighboring gene Protein kinase domain-containing protein;Serine/threonine-protein kinase PRP4 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A gateway-compatible yeast one-hybrid system. Deplancke B, et al. Genome Res, 2004 Oct. PMID 15489331, Free PMC Article
    2. Domain selection combined with improved cloning strategy for high throughput expression of higher eukaryotic proteins. Chen Y, et al. BMC Biotechnol, 2007 Jul 30. PMID 17663785, Free PMC Article
    3. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    4. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article
    5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    AN1-type domain-containing protein
    NP_001369930.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      7079868..7081520 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383296.2 → NP_001369930.1  AN1-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19723
      Conserved Domains (2) summary
      smart00154
      Location:130 → 167
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:14 → 34
      zf-A20; A20-like zinc finger
    Nucleotide Protein
    Heading Accession and Version

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