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    T01H3.2 Peroxin/Ferlin domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 174271, updated on 9-Dec-2024

    Summary

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    Official Symbol
    T01H3.2
    Official Full Name
    Peroxin/Ferlin domain-containing protein
    Primary source
    WormBase:WBGene00011348
    Locus tag
    CELE_T01H3.2
    See related
    AllianceGenome:WB:WBGene00011348
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Orthologous to human TECPR1 (tectonin beta-propeller repeat containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See T01H3.2 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    16
    Sequence:
    Chromosome: II; NC_003280.10 (7874238..7877994, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Zinc finger transcription factor family protein 17 Neighboring gene MFS domain-containing protein Neighboring gene ncRNA Neighboring gene V-type proton ATPase 21 kDa proteolipid subunit c'' Neighboring gene XH domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. Ceron J, et al. BMC Dev Biol, 2007 Apr 6. PMID 17417969, Free PMC Article
    2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Peroxin/Ferlin domain-containing protein
    NP_495658.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      7874238..7877994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063257.8 → NP_495658.1  Peroxin/Ferlin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495658.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q22088
      Conserved Domains (4) summary
      smart00694
      Location:726 → 759
      DysFC; Dysferlin domain, C-terminal region
      smart00693
      Location:72 → 129
      DysFN; Dysferlin domain, N-terminal region
      PHA00003
      Location:331 → 440
      B; internal scaffolding protein
      pfam06462
      Location:207 → 235
      Hyd_WA; Propeller
    Nucleotide Protein
    Heading Accession and Version

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