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    CG3407 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33606, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG3407provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031573
    Locus tag
    Dmel_CG3407
    See related
    AllianceGenome:FB:FBgn0031573
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cg3407; Dmel\CG3407
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG3407 in Genome Data Viewer
    Location:
    24C5-24C5; 2-11 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (3810801..3813410, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (3810801..3813410, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene bark beetle Neighboring gene Regulator of eph expression Neighboring gene long non-coding RNA:CR44076 Neighboring gene long non-coding RNA:CR44077

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Non-additive interactions involving two distinct elements mediate sloppy-paired regulation by pair-rule transcription factors. Prazak L, et al. Dev Biol, 2010 Aug 15. PMID 20435028, Free PMC Article
    2. A natural genetic variation screen identifies insulin signaling, neuronal communication, and innate immunity as modifiers of hyperglycemia in the absence of Sirt1. Palu RAS, et al. G3 (Bethesda), 2022 May 30. PMID 35435227, Free PMC Article
    3. Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism. Blatti C, et al. Nucleic Acids Res, 2015 Apr 30. PMID 25791631, Free PMC Article
    4. Pervasive variation of transcription factor orthologs contributes to regulatory network evolution. Nadimpalli S, et al. PLoS Genet, 2015 Mar. PMID 25748510, Free PMC Article
    5. Insights from Drosophila on mitochondrial complex I. Rhooms SK, et al. Cell Mol Life Sci, 2020 Feb. PMID 31485716, Free PMC Article

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG3407-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      3810801..3813410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_134965.3 → NP_608809.1  uncharacterized protein Dmel_CG3407 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608809.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VQV3
      Related
      FBpp0077204
      Conserved Domains (5) summary
      COG5048
      Location:494 → 656
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:582 → 602
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00020
      Location:555 → 574
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:580 → 602
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:622 → 645
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VQV3 Q9VQV3

    Gene LinkOut

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