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    Gcna Germ cell nuclear acidic peptidase [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31139, updated on 9-Dec-2024

    Summary

    Official Symbol
    Gcnaprovided by FlyBase
    Official Full Name
    Germ cell nuclear acidic peptidaseprovided by FlyBase
    Primary source
    FLYBASE:FBgn0023515
    Locus tag
    Dmel_CG14814
    See related
    AllianceGenome:FB:FBgn0023515
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG14814; Dmel\CG14814; EG:63B12.6
    Summary
    Enables DNA topoisomerase binding activity and MCM complex binding activity. Involved in positive regulation of DNA repair and protein-DNA covalent cross-linking repair. Located in P granule and chromosome. Is expressed in several structures, including CNS glial cell; germline cell; mesoderm; somatic muscle primordium; and ventral nerve cord primordium. Human ortholog(s) of this gene implicated in X-linked spermatogenic failure 4. Orthologous to human GCNA (germ cell nuclear acidic peptidase). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See Gcna in Genome Data Viewer
    Location:
    2B13-2B13; 1-0.2 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1862009..1865835, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (1756042..1759868, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 Neighboring gene Coat Protein (coatomer) delta Neighboring gene Mediator complex subunit 18 Neighboring gene Peroxin 5 Neighboring gene uncharacterized protein Neighboring gene Phosphoglycerate mutase 5

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA topoisomerase binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables MCM complex binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein-DNA covalent cross-linking repair IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in P granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    germ cell nuclear acidic peptidase
    Names
    CG14814-PA
    CG14814-PB
    CG14814-PD
    Gcna-PA
    Gcna-PB
    Gcna-PD

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      1862009..1865835 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001297864.1NP_001284793.1  germ cell nuclear acidic peptidase, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001284793.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7KW09
      UniProtKB/TrEMBL
      Q8MZ30
      Conserved Domains (1) summary
      smart00731
      Location:799951
      SprT; SprT homologues
    2. NM_166909.3NP_726770.2  germ cell nuclear acidic peptidase, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726770.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7KW09
      UniProtKB/TrEMBL
      Q8MZ30
      Related
      FBpp0070354
      Conserved Domains (1) summary
      smart00731
      Location:799951
      SprT; SprT homologues
    3. NM_130591.3NP_569947.2  germ cell nuclear acidic peptidase, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_569947.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8WHE2, O46086, Q9W554
      Related
      FBpp0070353
      Conserved Domains (1) summary
      smart00731
      Location:821973
      SprT; SprT homologues