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    copper ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817319, updated on 18-Sep-2024

    Summary

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    Official Full Name
    copper ion binding protein
    Primary source
    TAIR:AT2G27730
    Locus tag
    AT2G27730
    See related
    Araport:AT2G27730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K20.17; F15K20_17
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (11819728..11822036, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein family Neighboring gene 60S acidic ribosomal protein family Neighboring gene RAB6-interacting golgin (DUF662) Neighboring gene Surfeit locus protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hypoxia response protein HRM1 modulates the activity of mitochondrial electron transport chain in Arabidopsis under hypoxic stress. Tsai KJ, et al. New Phytol, 2023 Aug. PMID 37301985
    2. Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. Sunderhaus S, et al. J Biol Chem, 2006 Mar 10. PMID 16407270
    3. Mitochondrial complex I from Arabidopsis and rice: orthologs of mammalian and fungal components coupled with plant-specific subunits. Heazlewood JL, et al. Biochim Biophys Acta, 2003 Jul 10. PMID 12837548
    4. Internal architecture of mitochondrial complex I from Arabidopsis thaliana. Klodmann J, et al. Plant Cell, 2010 Mar. PMID 20197505, Free PMC Article
    5. Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism. Lee CP, et al. Mol Cell Proteomics, 2008 Jul. PMID 18385124

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_001336122.1
    NM_001336123.1
    NM_001336124.1
    NM_128332.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding HDA PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within photorespiration TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus HDA PubMed 
    located_in peroxisome HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    part_of respiratory chain complex I HDA PubMed 
    part_of respiratory chain complex I IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copper ion binding protein
    NP_565657.1
    • copper ion binding; FUNCTIONS IN: copper ion binding; INVOLVED IN: photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 74 Blast hits to 74 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11819728..11822036 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128332.4 → NP_565657.1  copper ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565657.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBD1, Q9ZUX4
      UniProtKB/TrEMBL
      A0A5S9X1Y3, A0A654EWR7

    2. NM_001336122.1 → NP_001324202.1  copper ion binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBD1, Q9ZUX4
      UniProtKB/TrEMBL
      A0A5S9X1Y3, A0A654EWR7

    3. NM_001336124.1 → NP_001324201.1  copper ion binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBD1, Q9ZUX4
      UniProtKB/TrEMBL
      A0A5S9X1Y3, A0A654EWR7

    4. NM_001336123.1 → NP_001324203.1  copper ion binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBD1, Q9ZUX4
      UniProtKB/TrEMBL
      A0A5S9X1Y3, A0A654EWR7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUX4.1

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