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    TLD-domain containing nucleolar protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815108, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TLD-domain containing nucleolar protein
    Primary source
    TAIR:AT2G05590
    Locus tag
    AT2G05590
    See related
    Araport:AT2G05590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20G20.6; T20G20_6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (2067061..2069255)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The mitochondrial oxidation resistance protein AtOXR2 increases plant biomass and tolerance to oxidative stress. Colombatti F, et al. J Exp Bot, 2019 Jun 28. PMID 30945737
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_126582.1
    NM_179607.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to oxidative stress IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TLD-domain containing nucleolar protein
    NP_565326.1
    • TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT4G39870.2); Has 669 Blast hits to 669 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 372; Fungi - 60; Plants - 112; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
    NP_849938.1
    • TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT4G39870.2); Has 907 Blast hits to 899 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 117; Plants - 118; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      2067061..2069255
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179607.3 → NP_849938.1  TLD-domain containing nucleolar protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849938.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYP9, Q94A07, Q9AT60
      Conserved Domains (1) summary
      smart00584
      Location:135 → 296
      TLDc; domain in TBC and LysM domain containing proteins

    2. NM_126582.1 → NP_565326.1  TLD-domain containing nucleolar protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565326.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94A07, Q9SL08
      Conserved Domains (1) summary
      cl02144
      Location:135 → 263
      TLD; TLD
    Nucleotide Protein
    Heading Accession and Version

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