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    Pleckstrin homology (PH) and lipid-binding START domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817379, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pleckstrin homology (PH) and lipid-binding START domains-containing protein
    Primary source
    TAIR:AT2G28320
    Locus tag
    AT2G28320
    See related
    Araport:AT2G28320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1B3.16; T1B3_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    21
    Sequence:
    Chromosome: 2; NC_003071.7 (12094621..12099644)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene trimethylguanosine synthase (DUF707) Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene uncharacterized protein Neighboring gene GATA transcription factor 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128391.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pleckstrin homology (PH) and lipid-binding START domains-containing protein
    NP_180399.2
    • Pleckstrin homology (PH) and lipid-binding START domains-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Pleckstrin homology-type (InterPro:IPR011993), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) and lipid-binding START domains-containing protein (TAIR:AT3G54800.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12094621..12099644
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128391.3 → NP_180399.2  Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180399.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNB6, F4IHT0
      Conserved Domains (1) summary
      PLN00188
      Location:14 → 733
      PLN00188; enhanced disease resistance protein (EDR2); Provisional
    Nucleotide Protein
    Heading Accession and Version

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