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    UBP19 ubiquitin-specific protease 19 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817000, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UBP19
    Official Full Name
    ubiquitin-specific protease 19
    Primary source
    TAIR:AT2G24640
    Locus tag
    AT2G24640
    See related
    Araport:AT2G24640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25P17.6; F25P17_6; ubiquitin-specific protease 19
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    Genomic context

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    See UBP19 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (10475153..10479454, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Glycosyl transferase family 2 protein Neighboring gene Transcriptional factor B3 family protein Neighboring gene B3 domain-containing protein REM13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202664.1
    NM_128025.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-specific protease 19
    NP_001189593.1
    • ubiquitin-specific protease 19 (UBP19); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1).
    NP_565576.1
    • ubiquitin-specific protease 19 (UBP19); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1); Has 10197 Blast hits to 8718 proteins in 376 species: Archae - 10; Bacteria - 271; Metazoa - 4969; Fungi - 1754; Plants - 1124; Viruses - 12; Other Eukaryotes - 2057 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10475153..10479454 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128025.4 → NP_565576.1  ubiquitin-specific protease 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565576.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C5D8, Q9SJA1
      UniProtKB/TrEMBL
      A0A178VXR2
      Conserved Domains (3) summary
      cd02661
      Location:173 → 478
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam00443
      Location:173 → 477
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam01753
      Location:64 → 101
      zf-MYND; MYND finger

    2. NM_001202664.1 → NP_001189593.1  ubiquitin-specific protease 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189593.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0Z3D8
      Conserved Domains (2) summary
      COG5271
      Location:319 → 500
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      cd02661
      Location:3 → 308
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJA1.2

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