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    COL3 CONSTANS-like 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817016, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COL3
    Official Full Name
    CONSTANS-like 3
    Primary source
    TAIR:AT2G24790
    Locus tag
    AT2G24790
    See related
    Araport:AT2G24790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCOL3; B-box domain protein 4; BBX4; CONSTANS-like 3; F27A10.10
    Summary
    Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching.
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    Genomic context

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    See COL3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (10566836..10568145)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor 3 Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene Peroxidase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth. Datta S, et al. Plant Cell, 2006 Jan. PMID 16339850, Free PMC Article
    2. Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering. Tripathi P, et al. Proc Natl Acad Sci U S A, 2017 Jan 3. PMID 27999181, Free PMC Article
    3. Arabidopsis TOE proteins convey a photoperiodic signal to antagonize CONSTANS and regulate flowering time. Zhang B, et al. Genes Dev, 2015 May 1. PMID 25934507, Free PMC Article
    4. Identification of LOV KELCH PROTEIN2 (LKP2)-interacting factors that can recruit LKP2 to nuclear bodies. Fukamatsu Y, et al. Plant Cell Physiol, 2005 Aug. PMID 15937324
    5. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128038.3
    NM_201801.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within red light signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of flower development IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CONSTANS-like 3
    NP_180052.1
    • CONSTANS-like 3 (COL3); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 4 (TAIR:AT5G24930.1); Has 3343 Blast hits to 2491 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 3148; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
    NP_973530.1
    • CONSTANS-like 3 (COL3); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 4 (TAIR:AT5G24930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10566836..10568145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128038.3 → NP_180052.1  CONSTANS-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180052.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7G9K6, Q8LDY3, Q9SK53
      UniProtKB/TrEMBL
      A0A178VTY8, A0A5S9X0W1, A0A654EVT8
      Conserved Domains (2) summary
      cd19821
      Location:7 → 50
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:229 → 271
      CCT; CCT motif

    2. NM_201801.1 → NP_973530.1  CONSTANS-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973530.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3EBU4
      Conserved Domains (1) summary
      smart00336
      Location:46 → 93
      BBOX; B-Box-type zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SK53.1

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