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    EMB3101 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837065, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EMB3101
    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G05600
    Locus tag
    AT1G05600
    See related
    Araport:AT1G05600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 3101; F3F20.5; F3F20_5
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    Genomic context

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    See EMB3101 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (1671916..1673923)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cation/H+ exchanger 23 Neighboring gene beta-hexosaminidase 2 Neighboring gene ADP-glucose pyrophosphorylase small subunit 2 Neighboring gene B3 domain protein (DUF313) Neighboring gene uridine-ribohydrolase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A J-like protein influences fatty acid composition of chloroplast lipids in Arabidopsis. Ajjawi I, et al. PLoS One, 2011. PMID 22028775, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001331559.1
    NM_100440.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001184914.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 22742 Blast hits to 7544 proteins in 214 species: Archae - 0; Bacteria - 12; Metazoa - 114; Fungi - 111; Plants - 22140; Viruses - 0; Other Eukaryotes - 365 (source: NCBI BLink).
    NP_001318928.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1671916..1673923
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001197985.2 → NP_001184914.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184914.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SYK1
      UniProtKB/TrEMBL
      A0A178WL60, A0A5S9SS89, A0A654E787
      Conserved Domains (3) summary
      PLN03218
      Location:225 → 458
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:335 → 363
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:156 → 198
      PPR_2; PPR repeat family

    2. NM_001331559.1 → NP_001318928.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SYK1
      UniProtKB/TrEMBL
      A0A178WL60, A0A5S9SS89, A0A654E787
      Conserved Domains (3) summary
      PLN03218
      Location:225 → 458
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:335 → 363
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:156 → 198
      PPR_2; PPR repeat family

    3. NM_100440.2 → NP_172051.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172051.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SYK1
      UniProtKB/TrEMBL
      A0A178WL60, A0A5S9SS89, A0A654E787
      Conserved Domains (3) summary
      PLN03218
      Location:225 → 458
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:335 → 363
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:156 → 198
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SYK1.1

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