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    Cystathionine beta-synthase (CBS) protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838102, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cystathionine beta-synthase (CBS) protein
    Primary source
    TAIR:AT1G15330
    Locus tag
    AT1G15330
    See related
    Araport:AT1G15330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.27; F9L1_27
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (5274271..5275602)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene signal recognition particle 54 kDa subunit Neighboring gene seed dormancy control protein Neighboring gene methyl-CPG-binding domain 10 Neighboring gene DUF4050 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtPV42a and AtPV42b redundantly regulate reproductive development in Arabidopsis thaliana. Fang L, et al. PLoS One, 2011 Apr 20. PMID 21533063, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101402.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within developmental process involved in reproduction IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in embryo sac development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube guidance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in stamen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cystathionine beta-synthase (CBS) protein
    NP_172985.1
    • Cystathionine beta-synthase (CBS) protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT1G80090.1); Has 526 Blast hits to 526 proteins in 132 species: Archae - 6; Bacteria - 4; Metazoa - 257; Fungi - 91; Plants - 124; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5274271..5275602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101402.3 → NP_172985.1  Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172985.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XI37
      UniProtKB/TrEMBL
      A0A178W892, A0A5S9UK18, A0A654EF87
      Conserved Domains (4) summary
      smart00116
      Location:300 → 347
      CBS; Domain in cystathionine beta-synthase and other proteins
      COG3448
      Location:213 → 347
      COG3448; CBS-domain-containing membrane protein [Signal transduction mechanisms]
      cd02205
      Location:302 → 345
      CBS_pair_SF; CBS repeat [structural motif]
      cl15354
      Location:25 → 186
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XI37.1

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