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    DTA4 downstream target of AGL15-4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844315, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DTA4
    Official Full Name
    downstream target of AGL15-4
    Primary source
    TAIR:AT1G79760
    Locus tag
    AT1G79760
    See related
    Araport:AT1G79760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    downstream target of AGL15-4; F19K16.26; F19K16_26
    Summary
    Identified as target of the AGL15 binding motif CArG.
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    Genomic context

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    See DTA4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (30011981..30013495)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene hAT transposon superfamily Neighboring gene NADP-malic enzyme 4 Neighboring gene CASP-like protein (DUF1677) Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_106625.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    downstream target of AGL15-4
    NP_178094.1
    • downstream target of AGL15-4 (DTA4); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30011981..30013495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334920.1 → NP_001321122.1  downstream target of AGL15-4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVU9, Q9MA02

    2. NM_106625.4 → NP_178094.1  downstream target of AGL15-4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178094.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVU9, A0A654ERZ4, Q9CA84
      Conserved Domains (1) summary
      pfam14226
      Location:61 → 101
      DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal
    Nucleotide Protein
    Heading Accession and Version

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