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    ATL3 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843563, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATL3
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT1G72310
    Locus tag
    AT1G72310
    See related
    Araport:AT1G72310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RING-H2 ZINC FINGER PROTEIN ATL3; T9N14.21
    Summary
    Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).
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    Genomic context

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    See ATL3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (27225665..27227545)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Kunitz family trypsin and protease inhibitor protein Neighboring gene Leucine-rich receptor-like protein kinase family protein Neighboring gene pumilio 23 Neighboring gene alanine aminotransferase 2 Neighboring gene NagB/RpiA/CoA transferase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_105890.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_177375.1
    • ATL3; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53820.1); Has 10122 Blast hits to 10073 proteins in 295 species: Archae - 0; Bacteria - 0; Metazoa - 2687; Fungi - 787; Plants - 5131; Viruses - 60; Other Eukaryotes - 1457 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27225665..27227545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105890.2 → NP_177375.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177375.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XF63
      UniProtKB/TrEMBL
      A0A5S9WS06, A0A7G2E5A6, Q0WT62
      Conserved Domains (1) summary
      cd16461
      Location:126 → 169
      RING-H2_EL5_like; RING finger, H2 subclass, found in rice E3 ubiquitin-protein ligase EL5 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XF63.1

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