U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    BPS1 BPS1-like protein (DUF793) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839536, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    BPS1
    Official Full Name
    BPS1-like protein (DUF793)
    Primary source
    TAIR:AT1G01550
    Locus tag
    AT1G01550
    See related
    Araport:AT1G01550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BYPASS 1; F22L4.9; F22L4_9
    Summary
    Encodes a protein with no functionally characterized domains that to prevent the synthesis of a novel substance that moves from the root to the shoot, where it modifies shoot growth by interfering with auxin signaling. Synthesis and delivery of this substance requires neither phloem nor endodermis.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BPS1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (199527..201775)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 28 Neighboring gene Protein kinase superfamily protein Neighboring gene MAP kinase 11 Neighboring gene transferring glycosyl group transferase (DUF604)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Long-distance signaling in bypass1 mutants: bioassay development reveals the bps signal to be a metabolite. Adhikari E, et al. Mol Plant, 2013 Jan. PMID 23335754
    2. BYPASS1: synthesis of the mobile root-derived signal requires active root growth and arrests early leaf development. Van Norman JM, et al. BMC Plant Biol, 2011 Feb 3. PMID 21291559, Free PMC Article
    3. BYPASS1: how a tiny mutant tells a big story about root-to-shoot signaling. Sieburth LE, et al. J Integr Plant Biol, 2010 Jan. PMID 20074142
    4. BYPASS1 negatively regulates a root-derived signal that controls plant architecture. Van Norman JM, et al. Curr Biol, 2004 Oct 5. PMID 15458645
    5. A cryptic natural variant allele of BYPASS2 suppresses the bypass1 mutant phenotype. Cummins AJ, et al. Plant Physiol, 2023 May 31. PMID 36905371, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A cryptic natural variant allele of BYPASS2 suppresses the bypass1 mutant phenotype.
      Title: A cryptic natural variant allele of BYPASS2 suppresses the bypass1 mutant phenotype.
    2. BPS1 role in shoots growth and shoot apical meristem maintenance.Bps1 role in WUS expression.
      Title: The Mobile bypass Signal Arrests Shoot Growth by Disrupting Shoot Apical Meristem Maintenance, Cytokinin Signaling, and WUS Transcription Factor Expression.
    3. the chemical nature of the bps signal was investigated.
      Title: Long-distance signaling in bypass1 mutants: bioassay development reveals the bps signal to be a metabolite.
    4. Data suggest that the BYPASS1 signal identifies a novel signaling pathway that regulates patterning and growth in parallel with auxin signaling, in multiple tissues and at multiple developmental stages.
      Title: In the absence of BYPASS1-related gene function, the bps signal disrupts embryogenesis by an auxin-independent mechanism.
    5. bps1 roots appear to require active growth in order to produce the mobile bps1 signal.
      Title: BYPASS1: synthesis of the mobile root-derived signal requires active root growth and arrests early leaf development.
    6. The current model suggests that BPS1 is required to prevent the synthesis of a novel substance that moves from the root to the shoot, where it modifies shoot growth by interfering with auxin signaling.
      Title: BYPASS1: how a tiny mutant tells a big story about root-to-shoot signaling.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_001035852.3
    NM_100037.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within shoot system development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    BPS1-like protein (DUF793)
    NP_001030929.1
    • BYPASS 1 (BPS1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_563630.1
    • BYPASS 1 (BPS1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 170 Blast hits to 170 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      199527..201775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100037.4 → NP_563630.1  BPS1-like protein (DUF793) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563630.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LMM6
      UniProtKB/TrEMBL
      A0A178WGC1, A0A5S9S350
      Conserved Domains (1) summary
      cl21731
      Location:36 → 262
      DUF677; Protein of unknown function (DUF677)

    2. NM_001035852.3 → NP_001030929.1  BPS1-like protein (DUF793) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030929.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LMM6
      UniProtKB/TrEMBL
      A0A178WGC1, A0A5S9S350
      Conserved Domains (1) summary
      cl21731
      Location:36 → 262
      DUF677; Protein of unknown function (DUF677)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LMM6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools