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    DnaJ and Myb-like DNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820318, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DnaJ and Myb-like DNA-binding domain-containing protein
    Primary source
    TAIR:AT3G11450
    Locus tag
    AT3G11450
    See related
    Araport:AT3G11450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (3605126..3608092, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate acyltransferase 5 Neighboring gene ncRNA Neighboring gene myb domain protein 65 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene 4'-phosphopantetheinyl transferase superfamily

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Feng J, et al. Plant Physiol, 2016 Nov. PMID 27630184, Free PMC Article
    2. Arabidopsis thaliana gonidialess A/Zuotin related factors (GlsA/ZRF) are essential for maintenance of meristem integrity. Guzmán-López JA, et al. Plant Mol Biol, 2016 May. PMID 26826012
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtZRF1a/b play both PRC1-related and PRC1-unrelated functions in regulating plant growth and development.[AtZRF1a]
      Title: ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    2. Results suggest that GlsA1 and GlsA2 are an essential component of the machinery that maintains the integrity of meristematic tissue.[GlsA1]
      Title: Arabidopsis thaliana gonidialess A/Zuotin related factors (GlsA/ZRF) are essential for maintenance of meristem integrity.
    Submit: New GeneRIF Correction

    General gene information

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    NM_111978.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Hsp70 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in 'de novo' cotranslational protein folding IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within embryo development ending in seed dormancy IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of flower development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of translational fidelity IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within shoot apical meristem development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DnaJ and Myb-like DNA-binding domain-containing protein
    NP_187752.2
    • DnaJ domain; Myb-like DNA-binding domain; FUNCTIONS IN: heat shock protein binding, DNA binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), MYB-like (InterPro:IPR017877), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778); BEST Arabidopsis thaliana protein match is: DnaJ domain; Myb-like DNA-binding domain (TAIR:AT5G06110.2); Has 60375 Blast hits to 43868 proteins in 3410 species: Archae - 228; Bacteria - 14410; Metazoa - 19184; Fungi - 5541; Plants - 3499; Viruses - 192; Other Eukaryotes - 17321 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3605126..3608092 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111978.3 → NP_187752.2  DnaJ and Myb-like DNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187752.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPF0, A0A5S9XB51, F4J6A8
      Conserved Domains (4) summary
      smart00717
      Location:589 → 638
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      COG5269
      Location:97 → 423
      ZUO1; Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
      cd00167
      Location:590 → 637
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam00226
      Location:99 → 178
      DnaJ; DnaJ domain
    Nucleotide Protein
    Heading Accession and Version

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