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    LOH1 RNA-binding CRS1 / YhbY (CRM) domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822128, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LOH1
    Official Full Name
    RNA-binding CRS1 / YhbY (CRM) domain protein
    Primary source
    TAIR:AT3G25440
    Locus tag
    AT3G25440
    See related
    Araport:AT3G25440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LAG One Homologue 1
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    Genomic context

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    See LOH1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (9223956..9225774)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 21 Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084738.2
    NM_113440.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding CRS1 / YhbY (CRM) domain protein
    NP_001078207.1
    • RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT4G13070.1); Has 777 Blast hits to 674 proteins in 113 species: Archae - 5; Bacteria - 24; Metazoa - 132; Fungi - 59; Plants - 343; Viruses - 36; Other Eukaryotes - 178 (source: NCBI BLink).
    NP_189171.2
    • RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT4G13070.1); Has 778 Blast hits to 674 proteins in 112 species: Archae - 5; Bacteria - 24; Metazoa - 131; Fungi - 59; Plants - 341; Viruses - 37; Other Eukaryotes - 181 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9223956..9225774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338746.1 → NP_001327058.1  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR52

    2. NM_001338748.1 → NP_001327056.1  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR52

    3. NM_001338747.1 → NP_001327057.1  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR52

    4. NM_001084738.2 → NP_001078207.1  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078207.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFI5, A0A7G2ELD0, A8MSD6
      Conserved Domains (1) summary
      smart01103
      Location:113 → 197
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly

    5. NM_113440.4 → NP_189171.2  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189171.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67XL4
      UniProtKB/TrEMBL
      A0A654FBU7, A0A7G2ENA0
      Conserved Domains (1) summary
      smart01103
      Location:177 → 261
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67XL4.1

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