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    Protein with RNI-like/FBD-like domain [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822309, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Protein with RNI-like/FBD-like domain
    Primary source
    TAIR:AT3G26930
    Locus tag
    AT3G26930
    See related
    Araport:AT3G26930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (9925555..9927393)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene dsRNA-binding protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113605.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Protein with RNI-like/FBD-like domain
    NP_189328.2
    • Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT4G13965.1); Has 974 Blast hits to 953 proteins in 26 species: Archae - 0; Bacteria - 8; Metazoa - 17; Fungi - 0; Plants - 945; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9925555..9927393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338845.1 → NP_001327583.1  Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHA3, A0A1I9LSS0
      Conserved Domains (3) summary
      smart00579
      Location:366 → 443
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:141 → 162
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:162 → 186
      LRR_2; Leucine Rich Repeat

    2. NM_113605.3 → NP_189328.2  Protein with RNI-like/FBD-like domain [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189328.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q45GL3, Q9LJF7
      Conserved Domains (3) summary
      smart00579
      Location:321 → 398
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:96 → 117
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:117 → 141
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version

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