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    ATP-dependent Clp protease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840230, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP-dependent Clp protease
    Primary source
    TAIR:AT1G33360
    Locus tag
    AT1G33360
    See related
    Araport:AT1G33360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10C21.5
    Summary
    Encodes ClpX3, a subunit of the Clp protease complex.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (12091780..12096486)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene tRNA-Gly

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_103063.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent Clp protease
    NP_564423.3
    • ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: CLP protease regulatory subunit X (TAIR:AT5G53350.1); Has 27211 Blast hits to 23373 proteins in 3012 species: Archae - 715; Bacteria - 14972; Metazoa - 1896; Fungi - 1201; Plants - 919; Viruses - 6; Other Eukaryotes - 7502 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12091780..12096486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103063.4 → NP_564423.3  ATP-dependent Clp protease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564423.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q66GN9, Q9C814, Q9C874
      UniProtKB/TrEMBL
      A0A178W4R7, A0A5S9WII0, A0A654EF11
      Conserved Domains (1) summary
      PRK05342
      Location:247 → 606
      clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66GN9.1

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