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    pde194 formyltransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842970, updated on 18-Sep-2024

    Summary

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    Official Symbol
    pde194
    Official Full Name
    formyltransferase
    Primary source
    TAIR:AT1G66520
    Locus tag
    AT1G66520
    See related
    Araport:AT1G66520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28G11.15; F28G11_15; pigment defective 194
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    Genomic context

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    See pde194 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (24816128..24818744, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Pre-mRNA cleavage complex II Neighboring gene AAR2 protein family Neighboring gene Arginyl-tRNA synthetase, class Ic Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334245.1
    NM_105323.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables methionyl-tRNA formyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in conversion of methionyl-tRNA to N-formyl-methionyl-tRNA IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    formyltransferase
    NP_176825.1
    • pigment defective 194 (pde194); FUNCTIONS IN: hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity, catalytic activity; INVOLVED IN: purine ribonucleotide biosynthetic process, biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Formyl transferase, C-terminal (InterPro:IPR005793), Methionine tRNA Formyltransferase-like (InterPro:IPR015518), Formyl transferase, C-terminal-like (InterPro:IPR011034), Formyl transferase, N-terminal (InterPro:IPR002376); Has 18100 Blast hits to 18093 proteins in 2820 species: Archae - 107; Bacteria - 12760; Metazoa - 410; Fungi - 163; Plants - 151; Viruses - 3; Other Eukaryotes - 4506 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24816128..24818744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105323.3 → NP_176825.1  formyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176825.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMZ3, A0A654EN06, Q84R23, Q9C712
      Conserved Domains (1) summary
      PLN02285
      Location:19 → 352
      PLN02285; methionyl-tRNA formyltransferase

    2. NM_001334245.1 → NP_001321620.1  formyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WP16, A0A1P8ARF1
    Nucleotide Protein
    Heading Accession and Version

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