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    Riboflavin synthase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838506, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Riboflavin synthase-like superfamily protein
    Primary source
    TAIR:AT1G19230
    Locus tag
    AT1G19230
    See related
    Araport:AT1G19230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29M8.10; T29M8_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (6643942..6649375)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene flavin-dependent monooxygenase 1 Neighboring gene TTF-type zinc finger protein with HAT dimerization domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Six Arabidopsis thaliana homologues of the human respiratory burst oxidase (gp91phox). Torres MA, et al. Plant J, 1998 May. PMID 9628030
    2. Production of reactive oxygen species by plant NADPH oxidases. Sagi M, et al. Plant Physiol, 2006 Jun. PMID 16760484, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101781.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Riboflavin synthase-like superfamily protein
    NP_001319042.1
    • Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Cytochrome b245, heavy chain (InterPro:IPR000778), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1).
    NP_173357.1
    • Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), FAD-binding 8 (InterPro:IPR013112), EF-HAND 2 (InterPro:IPR018249), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase protein F (TAIR:AT1G64060.1); Has 2473 Blast hits to 2332 proteins in 402 species: Archae - 8; Bacteria - 385; Metazoa - 719; Fungi - 641; Plants - 520; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6643942..6649375
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332388.1 → NP_001319042.1  Riboflavin synthase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IE24, F4IE25, O81211, Q9LMA3
      UniProtKB/TrEMBL
      A0A178WN42, A0A5S9V4E3

    2. NM_101781.2 → NP_173357.1  Riboflavin synthase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173357.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ECQ6
      Conserved Domains (7) summary
      cd00051
      Location:251 → 298
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam01794
      Location:413 → 560
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08022
      Location:602 → 720
      FAD_binding_8; FAD-binding domain
      pfam08030
      Location:726 → 908
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam08414
      Location:165 → 270
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:277 → 341
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:277 → 334
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81211.2

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