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    WAVE5 SCAR family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827594, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WAVE5
    Official Full Name
    SCAR family protein
    Primary source
    TAIR:AT4G18600
    Locus tag
    AT4G18600
    See related
    Araport:AT4G18600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSCAR-LIKE; F28J12.260; F28J12_260; SCARL; WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5
    Summary
    Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.
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    Genomic context

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    See WAVE5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (10239638..10247550, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene dual specificity protein phosphatase-like protein Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) Neighboring gene ncRNA Neighboring gene PYR1-like 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The role of Arabidopsis SCAR genes in ARP2-ARP3-dependent cell morphogenesis. Uhrig JF, et al. Development, 2007 Mar. PMID 17267444
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341297.1
    NM_001341299.1
    NM_001341300.1
    NM_117976.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SCAR family protein
    NP_193595.3
    • WAVE5; BEST Arabidopsis thaliana protein match is: SCAR family protein (TAIR:AT1G29170.2); Has 6173 Blast hits to 3634 proteins in 554 species: Archae - 31; Bacteria - 1033; Metazoa - 2349; Fungi - 894; Plants - 343; Viruses - 13; Other Eukaryotes - 1510 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10239638..10247550 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341298.1 → NP_001328469.1  SCAR family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4R2, A0A654FQM7

    2. NM_117976.4 → NP_193595.3  SCAR family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193595.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49528, Q5XPK0
      UniProtKB/TrEMBL
      A0A654FQM7

    3. NM_001341297.1 → NP_001328468.1  SCAR family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4S1, A0A654FQM7

    4. NM_001341299.1 → NP_001328466.1  SCAR family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4R7, A0A654FQM7

    5. NM_001341300.1 → NP_001328467.1  SCAR family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4T4, A0A654FQM7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XPK0.2

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