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    Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827845, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
    Primary source
    TAIR:AT4G20980
    Locus tag
    AT4G20980
    See related
    Araport:AT4G20980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T13K14.140; T13K14_140
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (11216881..11219638)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene alpha carbonic anhydrase 4 Neighboring gene alpha carbonic anhydrase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036606.1
    NM_001036607.1
    NM_001203854.1
    NM_118216.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
    NP_001031683.1
    • Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (TAIR:AT5G44320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001031684.1
    • Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (TAIR:AT5G44320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190783.1
    • Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (TAIR:AT5G44320.1).
    NP_193830.1
    • Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (TAIR:AT5G44320.1); Has 517 Blast hits to 503 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 127; Plants - 75; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11216881..11219638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203854.1 → NP_001190783.1  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190783.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B5X0N5, P56820, Q9C5Y8
      UniProtKB/TrEMBL
      A0A178V3J1, A0A5S9XUB4, Q8VZ60
      Conserved Domains (1) summary
      pfam05091
      Location:6 → 540
      eIF-3_zeta; Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)

    2. NM_118216.4 → NP_193830.1  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193830.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B5X0N5, P56820, Q9C5Y8
      UniProtKB/TrEMBL
      A0A178V3J1, A0A5S9XUB4, Q8VZ60
      Conserved Domains (1) summary
      pfam05091
      Location:6 → 540
      eIF-3_zeta; Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)

    3. NM_001036606.1 → NP_001031683.1  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031683.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B5X0N5, P56820, Q9C5Y8
      UniProtKB/TrEMBL
      A0A178V3J1, A0A5S9XUB4, Q8VZ60
      Conserved Domains (1) summary
      pfam05091
      Location:6 → 540
      eIF-3_zeta; Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)

    4. NM_001036607.1 → NP_001031684.1  Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031684.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B5X0N5, P56820, Q9C5Y8
      UniProtKB/TrEMBL
      A0A178V3J1, A0A5S9XUB4, Q8VZ60
      Conserved Domains (1) summary
      pfam05091
      Location:6 → 540
      eIF-3_zeta; Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P56820.1

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