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    transmembrane protein, putative (DUF1218) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827879, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF1218)
    Primary source
    TAIR:AT4G21310
    Locus tag
    AT4G21310
    See related
    Araport:AT4G21310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6K22.40; T6K22_40
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (11339048..11340085, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene photosystem II subunit QA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene Subtilase family protein Neighboring gene subtilase 3.12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Members of the DEAL subfamily of the DUF1218 gene family are required for bilateral symmetry but not for dorsoventrality in Arabidopsis leaves. Wilson-Sánchez D, et al. New Phytol, 2018 Feb. PMID 29139551
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001341477.1
    NM_118249.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within determination of bilateral symmetry IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with endoplasmic reticulum ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF1218)
    NP_193862.1
    • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT2G32280.1); Has 141 Blast hits to 141 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11339048..11340085 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118249.8 → NP_193862.1  transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193862.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81898
      UniProtKB/TrEMBL
      A0A654FRD7
      Conserved Domains (1) summary
      pfam06749
      Location:58 → 146
      DUF1218; Protein of unknown function (DUF1218)

    2. NM_001341477.1 → NP_001328505.1  transmembrane protein, putative (DUF1218) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B4W6
      Conserved Domains (1) summary
      pfam06749
      Location:20 → 108
      DUF1218; Protein of unknown function (DUF1218)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81898.1

    Gene LinkOut

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