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    Disease resistance protein (TIR-NBS-LRR class) family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829772, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Disease resistance protein (TIR-NBS-LRR class) family
    Primary source
    TAIR:AT4G36150
    Locus tag
    AT4G36150
    See related
    Araport:AT4G36150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23E13.40; F23E13_40
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (17104542..17108825)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene filament-like protein (DUF869) Neighboring gene Ribosomal protein L2 family Neighboring gene disease resistance protein (TIR-NBS-LRR class) Neighboring gene NAC domain containing protein 76 Neighboring gene uncharacterized protein Neighboring gene Leucine-rich receptor-like protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Coordinated regulation of plant defense and autoimmunity by paired trihelix transcription factors ASR3/AITF1 in Arabidopsis. Wang Y, et al. New Phytol, 2023 Feb. PMID 36266950
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Coordinated regulation of plant defense and autoimmunity by paired trihelix transcription factors ASR3/AITF1 in Arabidopsis.
      Title: Coordinated regulation of plant defense and autoimmunity by paired trihelix transcription factors ASR3/AITF1 in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_119782.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Disease resistance protein (TIR-NBS-LRR class) family
    NP_195338.1
    • Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45250.1); Has 23119 Blast hits to 17172 proteins in 640 species: Archae - 16; Bacteria - 1087; Metazoa - 1782; Fungi - 109; Plants - 19291; Viruses - 8; Other Eukaryotes - 826 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17104542..17108825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119782.3 → NP_195338.1  Disease resistance protein (TIR-NBS-LRR class) family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195338.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FW29, O65507
      Conserved Domains (6) summary
      cd09293
      Location:629 → 825
      AMN1; Antagonist of mitotic exit network protein 1
      smart00255
      Location:18 → 154
      TIR; Toll - interleukin 1 - resistance
      COG4886
      Location:742 → 909
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:677 → 700
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:218 → 468
      NB-ARC; NB-ARC domain
      pfam13238
      Location:239 → 379
      AAA_18; AAA domain
    Nucleotide Protein
    Heading Accession and Version

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