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    ARF18 auxin response factor 18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825356, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARF18
    Official Full Name
    auxin response factor 18
    Primary source
    TAIR:AT3G61830
    Locus tag
    AT3G61830
    See related
    Araport:AT3G61830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    auxin response factor 18; F21F14.12
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    Genomic context

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    See ARF18 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (22887889..22891455)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene auxin response factor, putative (DUF688) Neighboring gene Dof-type zinc finger DNA-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PIFs coordinate shade avoidance by inhibiting auxin repressor ARF18 and metabolic regulator QQS.
      Title: PIFs coordinate shade avoidance by inhibiting auxin repressor ARF18 and metabolic regulator QQS.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001340129.1
    NM_116048.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    auxin response factor 18
    NP_567119.1
    • auxin response factor 18 (ARF18); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 11 (TAIR:AT2G46530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22887889..22891455
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116048.3 → NP_567119.1  auxin response factor 18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567119.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WM85, Q9C5W9, Q9M355
      UniProtKB/TrEMBL
      A0A178V7A7, A0A5S9XN52
      Conserved Domains (3) summary
      pfam02309
      Location:493 → 560
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:128 → 228
      B3; B3 DNA binding domain
      pfam06507
      Location:254 → 333
      Auxin_resp; Auxin response factor

    2. NM_001340129.1 → NP_001327870.1  auxin response factor 18 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTM9, A0A5S9XN52
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C5W9.1

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