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    CYCD4;2 cyclin d4;2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830908, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYCD4;2
    Official Full Name
    cyclin d4;2
    Primary source
    TAIR:AT5G10440
    Locus tag
    AT5G10440
    See related
    Araport:AT5G10440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cyclin d4;2; F12B17.210; F12B17_210
    Summary
    Encodes a cyclin involved in cell proliferation during stomatal cell lineage development.
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    Genomic context

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    See CYCD4;2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (3280487..3282553, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene MATE efflux family protein Neighboring gene uncharacterized protein Neighboring gene arabinogalactan protein 4 Neighboring gene G-box regulating factor 6 Neighboring gene tRNA-Ser

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis D-type cyclin CYCD4 controls cell division in the stomatal lineage of the hypocotyl epidermis. Kono A, et al. Plant Cell, 2007 Apr. PMID 17449809, Free PMC Article
    2. A distinct type of cyclin D, CYCD4;2, involved in the activation of cell division in Arabidopsis. Kono A, et al. Plant Cell Rep, 2006 Jun. PMID 16408177
    3. An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes. Van Leene J, et al. Nat Protoc, 2015 Jan. PMID 25521792
    4. Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes. Boruc J, et al. Plant Physiol, 2010 Feb. PMID 20018602, Free PMC Article
    5. A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana. Van Leene J, et al. Mol Cell Proteomics, 2007 Jul. PMID 17426018

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343114.1
    NM_121082.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within stomatal lineage progression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cyclin d4;2
    NP_196606.3
    • cyclin d4;2 (CYCD4;2); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D4;1 (TAIR:AT5G65420.1); Has 2823 Blast hits to 2820 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1255; Fungi - 334; Plants - 962; Viruses - 9; Other Eukaryotes - 263 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3280487..3282553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121082.5 → NP_196606.3  cyclin d4;2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196606.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQN9, Q6NKU1, Q9LX96
      UniProtKB/TrEMBL
      A0A5S9Y571
      Conserved Domains (2) summary
      pfam00134
      Location:37 → 169
      Cyclin_N; Cyclin, N-terminal domain
      pfam02984
      Location:171 → 281
      Cyclin_C; Cyclin, C-terminal domain

    2. NM_001343114.1 → NP_001332308.1  cyclin d4;2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGJ6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WQN9.2

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