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    RBP45A RNA-binding protein 45A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835581, updated on 18-Sep-2024

    Summary

    Official Symbol
    RBP45A
    Official Full Name
    RNA-binding protein 45A
    Primary source
    TAIR:AT5G54900
    Locus tag
    AT5G54900
    See related
    Araport:AT5G54900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRBP45A; RNA-binding protein 45A
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    Genomic context

    See RBP45A in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (22295369..22298395)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DTW domain-containing protein Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain-containing protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene polyadenylate-binding protein interacting protein Neighboring gene AT hook motif-containing protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_124872.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables poly(A) binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 

    General protein information

    Preferred Names
    RNA-binding protein 45A
    NP_568815.1
    • RNA-binding protein 45A (RBP45A); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G27000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22295369..22298395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124872.3NP_568815.1  RNA-binding protein 45A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568815.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFU0, Q9FPJ8
      UniProtKB/TrEMBL
      A0A178UGM5, A0A5S9YGE6, A0A7G2FGD5
      Conserved Domains (3) summary
      cd12344
      Location:61138
      RRM1_SECp43_like; RNA recognition motif 1 (RRM1) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12345
      Location:153232
      RRM2_SECp43_like; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
      cd12346
      Location:259330
      RRM3_NGR1_NAM8_like; RNA recognition motif 3 (RRM3) found in yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8 and similar proteins