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    DEAD-box ATP-dependent RNA helicase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835802, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DEAD-box ATP-dependent RNA helicase
    Primary source
    TAIR:AT5G57000
    Locus tag
    AT5G57000
    See related
    Araport:AT5G57000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MHM17.12; MHM17_12
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (23063576..23065350, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cotton fiber protein Neighboring gene uncharacterized protein Neighboring gene proteinase inhibitor I25, cystatin, motif protein Neighboring gene calmodulin-binding family protein Neighboring gene casein kinase I-like 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345229.1
    NM_125082.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DEAD-box ATP-dependent RNA helicase
    NP_001318816.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 141 Blast hits to 104 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
    NP_200510.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 153 Blast hits to 116 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 33; Fungi - 7; Plants - 82; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23063576..23065350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125082.2 → NP_200510.1  DEAD-box ATP-dependent RNA helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200510.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GCR7, Q8L921, Q9LTS1

    2. NM_001345229.1 → NP_001318816.1  DEAD-box ATP-dependent RNA helicase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K958
    Nucleotide Protein
    Heading Accession and Version

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