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    RNA polymerase II transcription mediator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832140, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA polymerase II transcription mediator
    Primary source
    TAIR:AT5G20170
    Locus tag
    AT5G20170
    See related
    Araport:AT5G20170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O24.60; F5O24_60
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (6807375..6810919, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene kish-A-like protein Neighboring gene Ribosomal protein L36 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene nucleoporin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis mediator subunit 17 connects transcription with DNA repair after UV-B exposure. Giustozzi M, et al. Plant J, 2022 May. PMID 35220621
    2. The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana. Kim YJ, et al. EMBO J, 2011 Mar 2. PMID 21252857, Free PMC Article
    3. Interaction map of Arabidopsis Mediator complex expounding its topology. Maji S, et al. Nucleic Acids Res, 2019 May 7. PMID 30793213, Free PMC Article
    4. Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Bäckström S, et al. Mol Cell, 2007 Jun 8. PMID 17560376
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_122024.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within miRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mediator complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II transcription mediator
    NP_197517.3
    • RNA polymerase II transcription mediators; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med17 (InterPro:IPR019313); Has 84 Blast hits to 82 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 6; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6807375..6810919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122024.4 → NP_197517.3  RNA polymerase II transcription mediator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197517.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4K460
      UniProtKB/TrEMBL
      A0A5S9Y5S4, A0A654G2S2
      Conserved Domains (1) summary
      pfam10156
      Location:76 → 303
      Med17; Subunit 17 of Mediator complex
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4K460.1

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