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    zinc knuckle (CCHC-type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832144, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc knuckle (CCHC-type) family protein
    Primary source
    TAIR:AT5G20220
    Locus tag
    AT5G20220
    See related
    Araport:AT5G20220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O24.110; F5O24_110
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (6821881..6825981)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene nucleoporin-like protein Neighboring gene ncRNA Neighboring gene blue-copper-binding protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085139.1
    NM_001343646.1
    NM_122028.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc knuckle (CCHC-type) family protein
    NP_001078608.1
    • zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 3073 Blast hits to 2296 proteins in 256 species: Archae - 0; Bacteria - 10; Metazoa - 639; Fungi - 640; Plants - 331; Viruses - 1155; Other Eukaryotes - 298 (source: NCBI BLink).
    NP_568393.1
    • zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6821881..6825981
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343645.1 → NP_001330527.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BB27

    2. NM_122028.3 → NP_568393.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568393.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K466, Q8LEE4
      Conserved Domains (2) summary
      PTZ00368
      Location:266 → 379
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PRK14289
      Location:92 → 140
      PRK14289; molecular chaperone DnaJ

    3. NM_001343646.1 → NP_001330528.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BB42, A0A5S9Y633
      Conserved Domains (2) summary
      PTZ00368
      Location:282 → 395
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PRK14289
      Location:108 → 156
      PRK14289; molecular chaperone DnaJ

    4. NM_001085139.1 → NP_001078608.1  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078608.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K466, Q8LEE4
      Conserved Domains (2) summary
      PTZ00368
      Location:266 → 379
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PRK14289
      Location:92 → 140
      PRK14289; molecular chaperone DnaJ
    Nucleotide Protein
    Heading Accession and Version

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