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    LINC02405 long intergenic non-protein coding RNA 2405 [ Homo sapiens (human) ]

    Gene ID: 101927592, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02405provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2405provided by HGNC
    Primary source
    HGNC:HGNC:53333
    See related
    Ensembl:ENSG00000249345 AllianceGenome:HGNC:53333
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02405 in Genome Data Viewer
    Location:
    12q24.32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (126915227..127060397, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (126925674..127070678, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (127399773..127544942, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370061 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:127386923-127388122 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 20 Neighboring gene uncharacterized LOC105370063 Neighboring gene MPRA-validated peak2032 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7324 Neighboring gene MPRA-validated peak2033 silencer Neighboring gene uncharacterized LOC107984449 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:127584370-127584913 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:127610351-127611550 Neighboring gene NANOG hESC enhancer GRCh37_chr12:127618456-127618957 Neighboring gene uncharacterized LOC107984450 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:127630723-127631400 Neighboring gene uncharacterized LOC105370062

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104646.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC078878, AC079949, AC090117, BC032874
      Related
      ENST00000512624.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      126915227..127060397 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_019805499.1 Reference GRCh38.p14 PATCHES

      Range
      6602..6921 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      126925674..127070678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)