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    LOC101928188 uncharacterized LOC101928188 [ Homo sapiens (human) ]

    Gene ID: 101928188, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101928188
    Gene description
    uncharacterized LOC101928188
    See related
    Ensembl:ENSG00000259807
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101928188 in Genome Data Viewer
    Location:
    16p11.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (29211366..29220812, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (29492675..29502120, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (29222687..29232133, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene RRN3 pseudogene 2 Neighboring gene uncharacterized LOC101928215 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29126448-29126996 Neighboring gene uncharacterized LOC124903671 Neighboring gene uncharacterized LOC100129184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29141163-29141951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29145325-29145825 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29155082-29155768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29155769-29156455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29163489-29164159 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:29166386-29167585 Neighboring gene Sharpr-MPRA regulatory region 414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29177699-29178199 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:29196056-29197255 Neighboring gene RRN3P2-SNX29P2 intergenic nontranscribed DNase I hypersensitive site-defined enhancer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29203636-29204362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29209784-29210284 Neighboring gene Sharpr-MPRA regulatory region 8859 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:29232263-29232832 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:29233140-29233640 Neighboring gene uncharacterized LOC102723708 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:29240901-29241092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29260095-29260595 Neighboring gene uncharacterized LOC124903676

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188555.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009093
      Related
      ENST00000770679.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      29211366..29220812 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      29492675..29502120 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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