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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001320772.2 → NP_001307701.1 WD repeat domain phosphoinositide-interacting protein 1 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate exon, resulting in a novel 5' UTR and the use of a downstream start codon, compared to variant 1. The encoded isoform (b) has a shorter N-terminus compared to isoform a.
- Source sequence(s)
-
AC007780, AK301830, BC039867, BI764142
- Consensus CDS
-
CCDS82193.1
- UniProtKB/TrEMBL
- B4DX63, G5EA37
- Related
- ENSP00000437345.1, ENST00000546360.5
- Conserved Domains (2) summary
-
- sd00039
Location:63 → 102
- 7WD40; WD40 repeat [structural motif]
- cl29593
Location:6 → 180
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_017983.7 → NP_060453.3 WD repeat domain phosphoinositide-interacting protein 1 isoform a
See identical proteins and their annotated locations for NP_060453.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (a).
- Source sequence(s)
-
AC007780, BC039867, BI764142
- Consensus CDS
-
CCDS11677.1
- UniProtKB/Swiss-Prot
- Q5MNZ9, Q8IXM5, Q9NWF8
- UniProtKB/TrEMBL
-
B4DX63
- Related
- ENSP00000262139.4, ENST00000262139.10
- Conserved Domains (3) summary
-
- COG2319
Location:77 → 262
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:145 → 184
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:88 → 262
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
RNA
-
NR_135470.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC007780
-
NR_135471.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC007780
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
68421281..68457496 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017024808.2 → XP_016880297.1 WD repeat domain phosphoinositide-interacting protein 1 isoform X1
- UniProtKB/TrEMBL
-
B4DX63
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
69297798..69334178 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054316594.1 → XP_054172569.1 WD repeat domain phosphoinositide-interacting protein 1 isoform X1
- UniProtKB/TrEMBL
-
B4DX63